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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV11181460 hCoV-19/syrianhamster/India/MH-ICMR-MCL-21-11828-HAM1-NT-p1-vero-8230/2021 EPI_ISL_8542941 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2021-11-01 Mesocricetus auratus 29860 2022-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya D. Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29824 99.88
OEAV11181464 hCoV-19/syrianhamster/India/MH-ICMR-MCL-21-11828-HAM2-lung-p1-vero-8231/2021 EPI_ISL_8542930 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2021-11-01 Mesocricetus auratus 29861 2022-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya D. Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29825 99.88
OEAV11181468 hCoV-19/syrianhamster/India/MH-ICMR-MCL-21-12521-1-HAM9NT-P1-8414/2021 EPI_ISL_8542935 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2021-12-01 Mesocricetus auratus 29882 2022-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya D. Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29833 99.84
OEAV11181469 hCoV-19/syrianhamster/India/MH-ICMR-MCL-21-12521-1-HAM9-NT-p1-vero-8232/2021 EPI_ISL_8542932 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2021-11-01 Mesocricetus auratus 29903 2022-01-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya D. Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29854 99.84
OEAV11998299 hCoV-19/hamster/HongKong/SAD0022-S1/2022 EPI_ISL_9049733 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29877 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 29650 99.24
OEAV11998300 hCoV-19/hamster/HongKong/SAD0023-S2/2022 EPI_ISL_9049736 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29886 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 29799 99.71
OEAV11998301 hCoV-19/hamster/HongKong/SAD0024-S3/2022 EPI_ISL_9049737 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29832 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 26019 87.22
OEAV11998302 hCoV-19/hamster/HongKong/SAD0025-S4/2022 EPI_ISL_9049735 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29271 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 21634 73.91
OEAV11998303 hCoV-19/hamster/HongKong/SAD0026-S5/2022 EPI_ISL_9049734 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29877 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 29815 99.79
OEAV11998304 hCoV-19/hamster/HongKong/SAD0033-S6/2022 EPI_ISL_9049731 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29886 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 28681 95.97
OEAV11998305 hCoV-19/hamster/HongKong/SAD0034-S7/2022 EPI_ISL_9049729 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29885 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 29371 98.28
OEAV11998306 hCoV-19/hamster/HongKong/SAD0058-S8/2022 EPI_ISL_9049740 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-18 Mesocricetus auratus 29877 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 29790 99.71
OEAV11998307 hCoV-19/hamster/HongKong/WHP5230-S3/2022 EPI_ISL_9049732 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-17 Mesocricetus auratus 29725 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 29725 100.00
OEAV11998308 hCoV-19/hamster/HongKong/WHP5233-S4/2022 EPI_ISL_9049727 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-17 Mesocricetus auratus 29733 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 29733 100.00
OEAV11998309 hCoV-19/hamster/HongKong/WHP5234-S5/2022 EPI_ISL_9049730 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-17 Mesocricetus auratus 29885 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 24127 80.73
OEAV11998310 hCoV-19/hamster/HongKong/WHP5235-S6/2022 EPI_ISL_9049728 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2022-01-17 Mesocricetus auratus 29714 2022-01-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Agriculture, Fisheries and Conservation Department, Hong Kong SAR Huiling Yen, Leo L.M. Poon, Malik Peiris, Haogao Gu, Thomas H C Sit, Christopher J Brackman School of Public Health, The University of Hong Kong 27867 93.78
OEAV17744681 hCoV-19/syrianhamster/India/DL-ICMR-MCL-22-856-HAM43LUNG-10819-1/2022 EPI_ISL_13873037 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2022-01-07 Mesocricetus auratus 29854 2022-07-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29612 99.19
OEAV17744682 hCoV-19/syrianhamster/India/DL-ICMR-MCL-22-856-HAM43LUNG-10820-2/2022 EPI_ISL_13873056 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2022-01-07 Mesocricetus auratus 29878 2022-07-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29521 98.81
OEAV17857173 hCoV-19/Hamster/India/MH-MCL-22-H-5040_RNA-10858_Ham-83/2022 EPI_ISL_14035968 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2022-06-04 Mesocricetus auratus 29830 2022-07-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya D. Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29804 99.91
OEAV17857174 hCoV-19/Hamster/India/MH-MCL-22-H-5042_RNA-10864_Ham-85/2022 EPI_ISL_14035969 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2022-06-04 Mesocricetus auratus 29767 2022-07-25 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex Pragya D. Yadav Indian Council of Medical Research-National Institute of Virology, Microbial Containment Complex 29675 99.69
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